DemuxStat & illuminaFilter are now optional
- Separation of these steps from others ine CORE pipeline - New param to skip this new subworkflow (for dev) Ref: #55
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- conf/base.config 1 addition, 1 deletionconf/base.config
- modules/local/module_core.nf 3 additions, 3 deletionsmodules/local/module_core.nf
- nextflow.config 3 additions, 0 deletionsnextflow.config
- sub-workflows/local/core_illumina.nf 51 additions, 0 deletionssub-workflows/local/core_illumina.nf
- sub-workflows/local/core_pipeline.nf 7 additions, 28 deletionssub-workflows/local/core_pipeline.nf
- workflow/illumina_qc.nf 10 additions, 4 deletionsworkflow/illumina_qc.nf
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