[demuxStat] Bad index counting when sample name is a subset of another
indexNumber File :
Sample NumberOfIndex
A20 2
M22 2
U19 2
Act 2
A22 2
M19 2
NonAct 2
A19 2
M20 2
Head of demultiplexStats :
Project Sample Barcode bcCount bcPerfect bcOneMismatch percentageOfFragment
default Undetermined unknown 61380902 3107805702 - 1.98
EELMIG A20 CTAGTGCTCT+TACTGTTCCA 0 0 NA 0
EELMIG M22 GACGAGATTA+AGGATAATGT 0 0 NA 0
EELMIG U19 GACTGAGTAG+CACTATCAAC 0 0 NA 0
EELMIG Act GAACTGAGCG+CGCTCCACGA+AGGTCAGATA+TATCTTGTAG 0 0 NA 0
EELMIG A22 GATCAAGGCA+ATTAACAAGG 0 0 NA 0
EELMIG M19 CGTCTCATAT+AGCTACTATA 0 0 NA 0
EELMIG NonAct AGGTCAGATA+TATCTTGTAG 0 0 NA 0
EELMIG A19 AACATCGCGC+ACAAGTGGAC 0 0 NA 0
EELMIG M20 ATTCCATAAG+CCACCAGGCA 0 0 NA 0
EELMIG Undetermined CAAGCTAGAT+CGCTATGTGT 355490360 - - 11.44
EELMIG Undetermined CCGCGGTTAT+CTAGCGCTGT 354965600 - - 11.42
EELMIG Undetermined AAGTCCAAAT+TACTCATAGT 338197600 - - 10.88
EELMIG Undetermined AGTTCAGGAT+TCTGTTGGGT 318512060 - - 10.25
EELMIG Undetermined TGGATCGAAT+TATCGCACGT 301638400 - - 9.71
EELMIG Undetermined TTATAACCAT+TCGATATCGT 290432320 - - 9.35
EELMIG Undetermined GGACTTGGAT+CGTCTGCGGT 287730380 - - 9.26
EELMIG Undetermined ATCCACTGAT+ACGCACCTGT 276224160 - - 8.89
EELMIG Undetermined GCTTGTCAAT+GTATGTTCGT 270699760 - - 8.71
The sample Act
has barcode from Act
and nonAct
samples...
Need to be fixed !
There are two problems :
- when getting index from sampleName
- non-coherence between index founded (4) and info in indexNumber file (2)...
Edited by Jules Sabban