[demuxStat] Bad index counting when sample name is a subset of another

indexNumber File :

Sample  NumberOfIndex
A20     2
M22     2
U19     2
Act     2
A22     2
M19     2
NonAct  2
A19     2
M20     2

Head of demultiplexStats :

Project Sample  Barcode bcCount bcPerfect       bcOneMismatch   percentageOfFragment
default Undetermined    unknown 61380902        3107805702      -       1.98
EELMIG  A20     CTAGTGCTCT+TACTGTTCCA   0       0       NA      0
EELMIG  M22     GACGAGATTA+AGGATAATGT   0       0       NA      0
EELMIG  U19     GACTGAGTAG+CACTATCAAC   0       0       NA      0
EELMIG  Act     GAACTGAGCG+CGCTCCACGA+AGGTCAGATA+TATCTTGTAG     0       0       NA      0
EELMIG  A22     GATCAAGGCA+ATTAACAAGG   0       0       NA      0
EELMIG  M19     CGTCTCATAT+AGCTACTATA   0       0       NA      0
EELMIG  NonAct  AGGTCAGATA+TATCTTGTAG   0       0       NA      0
EELMIG  A19     AACATCGCGC+ACAAGTGGAC   0       0       NA      0
EELMIG  M20     ATTCCATAAG+CCACCAGGCA   0       0       NA      0
EELMIG  Undetermined    CAAGCTAGAT+CGCTATGTGT   355490360       -       -       11.44
EELMIG  Undetermined    CCGCGGTTAT+CTAGCGCTGT   354965600       -       -       11.42
EELMIG  Undetermined    AAGTCCAAAT+TACTCATAGT   338197600       -       -       10.88
EELMIG  Undetermined    AGTTCAGGAT+TCTGTTGGGT   318512060       -       -       10.25
EELMIG  Undetermined    TGGATCGAAT+TATCGCACGT   301638400       -       -       9.71
EELMIG  Undetermined    TTATAACCAT+TCGATATCGT   290432320       -       -       9.35
EELMIG  Undetermined    GGACTTGGAT+CGTCTGCGGT   287730380       -       -       9.26
EELMIG  Undetermined    ATCCACTGAT+ACGCACCTGT   276224160       -       -       8.89
EELMIG  Undetermined    GCTTGTCAAT+GTATGTTCGT   270699760       -       -       8.71

The sample Act has barcode from Act and nonAct samples... Need to be fixed !

There are two problems :

• when getting index from sampleName
• non-coherence between index founded (4) and info in indexNumber file (2)...